It has misunderstandings in the same vein as Overlord: The Greek alphabet girls of Shadow Garden consider Cid some unnatural genius, who sees through everything, but in reality Cid is just living his own (self-aware) chuuni fantasy and coincidentally happens to be correct about great many things. That's one big misunderstanding. On the other hand, it's not something that's going on in every scene, rather, I don't think it's even happening in every episode.